Potato virus Y; the Andean connection.
Identifieur interne : 000411 ( Main/Exploration ); précédent : 000410; suivant : 000412Potato virus Y; the Andean connection.
Auteurs : Segundo Fuentes [Pérou] ; Roger A C. Jones [Pérou, États-Unis] ; Hiroki Matsuoka [Australie] ; Kazusato Ohshima [Australie] ; Jan Kreuze [Pérou] ; Adrian J. Gibbs [Japon]Source :
- Virus evolution [ 2057-1577 ] ; 2019.
Abstract
Potato virus Y (PVY) causes disease in potatoes and other solanaceous crops. The appearance of its necrogenic strains in the 1980s made it the most economically important virus of potatoes. We report the isolation and genomic sequences of 32 Peruvian isolates of PVY which, together with 428 published PVY genomic sequences, gave an alignment of 460 sequences. Of these 190 (41%) were non-recombinant, and 162 of these provided a dated phylogeny, that corresponds well with the likely history of PVY, and show that PVY originated in South America which is where potatoes were first domesticated. The most basal divergences of the PVY population produced the N and C: O phylogroups; the origin of the N phylogroup is clearly Andean, but that of the O and C phylogroups is unknown, although they may have been first to establish in European crops. The current PVY population originated around 156 CE. PVY was probably first taken from South America to Europe in the 16th century in tubers. Most of the present PVY diversity emerged in the second half of the 19th century, after the Phytophthora infestans epidemics of the mid-19th century destroyed the European crop and stimulated potato breeding. Imported breeding lines were shared, and there was no quarantine. The early O population was joined later by N phylogroup isolates and their recombinants generated the R1 and R2 populations of damaging necrogenic strains. Our dating study has confirmed that human activity has dominated the phylodynamics of PVY for the last two millennia.
DOI: 10.1093/ve/vez037
PubMed: 31559020
PubMed Central: PMC6755682
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Potato virus Y; the Andean connection.</title><author><name sortKey="Fuentes, Segundo" sort="Fuentes, Segundo" uniqKey="Fuentes S" first="Segundo" last="Fuentes">Segundo Fuentes</name><affiliation wicri:level="1"><nlm:affiliation>Crop and System Sciences Division, International Potato Center (CIP), Apartado 1558, Lima 12, Peru.</nlm:affiliation><country xml:lang="fr">Pérou</country><wicri:regionArea>Crop and System Sciences Division, International Potato Center (CIP), Apartado 1558, Lima 12</wicri:regionArea><wicri:noRegion>Lima 12</wicri:noRegion></affiliation></author><author><name sortKey="Jones, Roger A C" sort="Jones, Roger A C" uniqKey="Jones R" first="Roger A C" last="Jones">Roger A C. Jones</name><affiliation wicri:level="1"><nlm:affiliation>Crop and System Sciences Division, International Potato Center (CIP), Apartado 1558, Lima 12, Peru.</nlm:affiliation><country xml:lang="fr">Pérou</country><wicri:regionArea>Crop and System Sciences Division, International Potato Center (CIP), Apartado 1558, Lima 12</wicri:regionArea><wicri:noRegion>Lima 12</wicri:noRegion></affiliation><affiliation wicri:level="2"><nlm:affiliation>Institute of Agriculture, University of Western Australia, 35 Stirling Highway, Crawley, WA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><placeName><region type="state">Washington (État)</region></placeName><wicri:cityArea>Institute of Agriculture, University of Western Australia, 35 Stirling Highway, Crawley</wicri:cityArea></affiliation></author><author><name sortKey="Matsuoka, Hiroki" sort="Matsuoka, Hiroki" uniqKey="Matsuoka H" first="Hiroki" last="Matsuoka">Hiroki Matsuoka</name><affiliation wicri:level="1"><nlm:affiliation>Department of Primary Industries and Regional Development, 3 Baron-Hay Court, South Perth, WA, Australia.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>Department of Primary Industries and Regional Development, 3 Baron-Hay Court, South Perth, WA</wicri:regionArea><wicri:noRegion>WA</wicri:noRegion></affiliation></author><author><name sortKey="Ohshima, Kazusato" sort="Ohshima, Kazusato" uniqKey="Ohshima K" first="Kazusato" last="Ohshima">Kazusato Ohshima</name><affiliation wicri:level="1"><nlm:affiliation>Department of Primary Industries and Regional Development, 3 Baron-Hay Court, South Perth, WA, Australia.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>Department of Primary Industries and Regional Development, 3 Baron-Hay Court, South Perth, WA</wicri:regionArea><wicri:noRegion>WA</wicri:noRegion></affiliation></author><author><name sortKey="Kreuze, Jan" sort="Kreuze, Jan" uniqKey="Kreuze J" first="Jan" last="Kreuze">Jan Kreuze</name><affiliation wicri:level="1"><nlm:affiliation>Crop and System Sciences Division, International Potato Center (CIP), Apartado 1558, Lima 12, Peru.</nlm:affiliation><country xml:lang="fr">Pérou</country><wicri:regionArea>Crop and System Sciences Division, International Potato Center (CIP), Apartado 1558, Lima 12</wicri:regionArea><wicri:noRegion>Lima 12</wicri:noRegion></affiliation></author><author><name sortKey="Gibbs, Adrian J" sort="Gibbs, Adrian J" uniqKey="Gibbs A" first="Adrian J" last="Gibbs">Adrian J. Gibbs</name><affiliation wicri:level="1"><nlm:affiliation>Laboratory of Plant Virology, Department of Applied Biological Sciences, Faculty of Agriculture, Saga University, 1-banchi, Honjo-machi, Saga, Japan.</nlm:affiliation><country xml:lang="fr">Japon</country><wicri:regionArea>Laboratory of Plant Virology, Department of Applied Biological Sciences, Faculty of Agriculture, Saga University, 1-banchi, Honjo-machi, Saga</wicri:regionArea><wicri:noRegion>Saga</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2019">2019</date><idno type="RBID">pubmed:31559020</idno><idno type="pmid">31559020</idno><idno type="doi">10.1093/ve/vez037</idno><idno type="pmc">PMC6755682</idno><idno type="wicri:Area/Main/Corpus">000376</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000376</idno><idno type="wicri:Area/Main/Curation">000376</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000376</idno><idno type="wicri:Area/Main/Exploration">000376</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Potato virus Y; the Andean connection.</title><author><name sortKey="Fuentes, Segundo" sort="Fuentes, Segundo" uniqKey="Fuentes S" first="Segundo" last="Fuentes">Segundo Fuentes</name><affiliation wicri:level="1"><nlm:affiliation>Crop and System Sciences Division, International Potato Center (CIP), Apartado 1558, Lima 12, Peru.</nlm:affiliation><country xml:lang="fr">Pérou</country><wicri:regionArea>Crop and System Sciences Division, International Potato Center (CIP), Apartado 1558, Lima 12</wicri:regionArea><wicri:noRegion>Lima 12</wicri:noRegion></affiliation></author><author><name sortKey="Jones, Roger A C" sort="Jones, Roger A C" uniqKey="Jones R" first="Roger A C" last="Jones">Roger A C. Jones</name><affiliation wicri:level="1"><nlm:affiliation>Crop and System Sciences Division, International Potato Center (CIP), Apartado 1558, Lima 12, Peru.</nlm:affiliation><country xml:lang="fr">Pérou</country><wicri:regionArea>Crop and System Sciences Division, International Potato Center (CIP), Apartado 1558, Lima 12</wicri:regionArea><wicri:noRegion>Lima 12</wicri:noRegion></affiliation><affiliation wicri:level="2"><nlm:affiliation>Institute of Agriculture, University of Western Australia, 35 Stirling Highway, Crawley, WA.</nlm:affiliation><country xml:lang="fr">États-Unis</country><placeName><region type="state">Washington (État)</region></placeName><wicri:cityArea>Institute of Agriculture, University of Western Australia, 35 Stirling Highway, Crawley</wicri:cityArea></affiliation></author><author><name sortKey="Matsuoka, Hiroki" sort="Matsuoka, Hiroki" uniqKey="Matsuoka H" first="Hiroki" last="Matsuoka">Hiroki Matsuoka</name><affiliation wicri:level="1"><nlm:affiliation>Department of Primary Industries and Regional Development, 3 Baron-Hay Court, South Perth, WA, Australia.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>Department of Primary Industries and Regional Development, 3 Baron-Hay Court, South Perth, WA</wicri:regionArea><wicri:noRegion>WA</wicri:noRegion></affiliation></author><author><name sortKey="Ohshima, Kazusato" sort="Ohshima, Kazusato" uniqKey="Ohshima K" first="Kazusato" last="Ohshima">Kazusato Ohshima</name><affiliation wicri:level="1"><nlm:affiliation>Department of Primary Industries and Regional Development, 3 Baron-Hay Court, South Perth, WA, Australia.</nlm:affiliation><country xml:lang="fr">Australie</country><wicri:regionArea>Department of Primary Industries and Regional Development, 3 Baron-Hay Court, South Perth, WA</wicri:regionArea><wicri:noRegion>WA</wicri:noRegion></affiliation></author><author><name sortKey="Kreuze, Jan" sort="Kreuze, Jan" uniqKey="Kreuze J" first="Jan" last="Kreuze">Jan Kreuze</name><affiliation wicri:level="1"><nlm:affiliation>Crop and System Sciences Division, International Potato Center (CIP), Apartado 1558, Lima 12, Peru.</nlm:affiliation><country xml:lang="fr">Pérou</country><wicri:regionArea>Crop and System Sciences Division, International Potato Center (CIP), Apartado 1558, Lima 12</wicri:regionArea><wicri:noRegion>Lima 12</wicri:noRegion></affiliation></author><author><name sortKey="Gibbs, Adrian J" sort="Gibbs, Adrian J" uniqKey="Gibbs A" first="Adrian J" last="Gibbs">Adrian J. Gibbs</name><affiliation wicri:level="1"><nlm:affiliation>Laboratory of Plant Virology, Department of Applied Biological Sciences, Faculty of Agriculture, Saga University, 1-banchi, Honjo-machi, Saga, Japan.</nlm:affiliation><country xml:lang="fr">Japon</country><wicri:regionArea>Laboratory of Plant Virology, Department of Applied Biological Sciences, Faculty of Agriculture, Saga University, 1-banchi, Honjo-machi, Saga</wicri:regionArea><wicri:noRegion>Saga</wicri:noRegion></affiliation></author></analytic><series><title level="j">Virus evolution</title><idno type="ISSN">2057-1577</idno><imprint><date when="2019" type="published">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><i>Potato virus Y</i> (PVY) causes disease in potatoes and other solanaceous crops. The appearance of its necrogenic strains in the 1980s made it the most economically important virus of potatoes. We report the isolation and genomic sequences of 32 Peruvian isolates of PVY which, together with 428 published PVY genomic sequences, gave an alignment of 460 sequences. Of these 190 (41%) were non-recombinant, and 162 of these provided a dated phylogeny, that corresponds well with the likely history of PVY, and show that PVY originated in South America which is where potatoes were first domesticated. The most basal divergences of the PVY population produced the N and C: O phylogroups; the origin of the N phylogroup is clearly Andean, but that of the O and C phylogroups is unknown, although they may have been first to establish in European crops. The current PVY population originated around 156 CE. PVY was probably first taken from South America to Europe in the 16th century in tubers. Most of the present PVY diversity emerged in the second half of the 19th century, after the <i>Phytophthora infestans</i> epidemics of the mid-19th century destroyed the European crop and stimulated potato breeding. Imported breeding lines were shared, and there was no quarantine. The early O population was joined later by N phylogroup isolates and their recombinants generated the R1 and R2 populations of damaging necrogenic strains. Our dating study has confirmed that human activity has dominated the phylodynamics of PVY for the last two millennia.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">31559020</PMID><DateRevised><Year>2020</Year><Month>09</Month><Day>30</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><ISSN IssnType="Print">2057-1577</ISSN><JournalIssue CitedMedium="Print"><Volume>5</Volume><Issue>2</Issue><PubDate><Year>2019</Year><Month>Jul</Month></PubDate></JournalIssue><Title>Virus evolution</Title><ISOAbbreviation>Virus Evol</ISOAbbreviation></Journal><ArticleTitle>Potato virus Y; the Andean connection.</ArticleTitle><Pagination><MedlinePgn>vez037</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1093/ve/vez037</ELocationID><Abstract><AbstractText><i>Potato virus Y</i> (PVY) causes disease in potatoes and other solanaceous crops. The appearance of its necrogenic strains in the 1980s made it the most economically important virus of potatoes. We report the isolation and genomic sequences of 32 Peruvian isolates of PVY which, together with 428 published PVY genomic sequences, gave an alignment of 460 sequences. Of these 190 (41%) were non-recombinant, and 162 of these provided a dated phylogeny, that corresponds well with the likely history of PVY, and show that PVY originated in South America which is where potatoes were first domesticated. The most basal divergences of the PVY population produced the N and C: O phylogroups; the origin of the N phylogroup is clearly Andean, but that of the O and C phylogroups is unknown, although they may have been first to establish in European crops. The current PVY population originated around 156 CE. PVY was probably first taken from South America to Europe in the 16th century in tubers. Most of the present PVY diversity emerged in the second half of the 19th century, after the <i>Phytophthora infestans</i> epidemics of the mid-19th century destroyed the European crop and stimulated potato breeding. Imported breeding lines were shared, and there was no quarantine. The early O population was joined later by N phylogroup isolates and their recombinants generated the R1 and R2 populations of damaging necrogenic strains. Our dating study has confirmed that human activity has dominated the phylodynamics of PVY for the last two millennia.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Fuentes</LastName><ForeName>Segundo</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Crop and System Sciences Division, International Potato Center (CIP), Apartado 1558, Lima 12, Peru.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jones</LastName><ForeName>Roger A C</ForeName><Initials>RAC</Initials><AffiliationInfo><Affiliation>Crop and System Sciences Division, International Potato Center (CIP), Apartado 1558, Lima 12, Peru.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Institute of Agriculture, University of Western Australia, 35 Stirling Highway, Crawley, WA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Matsuoka</LastName><ForeName>Hiroki</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>Department of Primary Industries and Regional Development, 3 Baron-Hay Court, South Perth, WA, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ohshima</LastName><ForeName>Kazusato</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>Department of Primary Industries and Regional Development, 3 Baron-Hay Court, South Perth, WA, Australia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kreuze</LastName><ForeName>Jan</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Crop and System Sciences Division, International Potato Center (CIP), Apartado 1558, Lima 12, Peru.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Gibbs</LastName><ForeName>Adrian J</ForeName><Initials>AJ</Initials><Identifier Source="ORCID">0000-0003-4975-9459</Identifier><AffiliationInfo><Affiliation>Laboratory of Plant Virology, Department of Applied Biological Sciences, Faculty of Agriculture, Saga University, 1-banchi, Honjo-machi, Saga, Japan.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2019</Year><Month>09</Month><Day>23</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Virus Evol</MedlineTA><NlmUniqueID>101664675</NlmUniqueID><ISSNLinking>2057-1577</ISSNLinking></MedlineJournalInfo><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Colombian exchange</Keyword><Keyword MajorTopicYN="N">dating</Keyword><Keyword MajorTopicYN="N">history</Keyword><Keyword MajorTopicYN="N">phylogenetics</Keyword><Keyword MajorTopicYN="N">potato virus Y</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2019</Year><Month>9</Month><Day>28</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2019</Year><Month>9</Month><Day>29</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2019</Year><Month>9</Month><Day>29</Day><Hour>6</Hour><Minute>1</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">31559020</ArticleId><ArticleId IdType="doi">10.1093/ve/vez037</ArticleId><ArticleId IdType="pii">vez037</ArticleId><ArticleId IdType="pmc">PMC6755682</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Mol Biol Evol. 1999 Mar;16(3):405-9</Citation><ArticleIdList><ArticleId IdType="pubmed">10331266</ArticleId></ArticleIdList></Reference><Reference><Citation>Virology. 1999 Dec 20;265(2):218-25</Citation><ArticleIdList><ArticleId IdType="pubmed">10600594</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2000 Feb;16(2):130-4</Citation><ArticleIdList><ArticleId IdType="pubmed">10842734</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2000 Jun;16(6):562-3</Citation><ArticleIdList><ArticleId IdType="pubmed">10980155</ArticleId></ArticleIdList></Reference><Reference><Citation>Bioinformatics. 2000 Jul;16(7):573-82</Citation><ArticleIdList><ArticleId IdType="pubmed">11038328</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2001 Nov 20;98(24):13757-62</Citation><ArticleIdList><ArticleId IdType="pubmed">11717435</ArticleId></ArticleIdList></Reference><Reference><Citation>Syst Biol. 2003 Oct;52(5):696-704</Citation><ArticleIdList><ArticleId IdType="pubmed">14530136</ArticleId></ArticleIdList></Reference><Reference><Citation>J Mol Evol. 1992 Feb;34(2):126-9</Citation><ArticleIdList><ArticleId IdType="pubmed">1556748</ArticleId></ArticleIdList></Reference><Reference><Citation>Arch Virol. 2005 Apr;150(4):709-20</Citation><ArticleIdList><ArticleId IdType="pubmed">15592887</ArticleId></ArticleIdList></Reference><Reference><Citation>AIDS Res Hum Retroviruses. 2005 Jan;21(1):98-102</Citation><ArticleIdList><ArticleId IdType="pubmed">15665649</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Biol Evol. 2006 Feb;23(2):254-67</Citation><ArticleIdList><ArticleId IdType="pubmed">16221896</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Evol Biol. 2006 Jan 03;6:1</Citation><ArticleIdList><ArticleId IdType="pubmed">16388682</ArticleId></ArticleIdList></Reference><Reference><Citation>Arch Virol. 2006 Jun;151(6):1055-74</Citation><ArticleIdList><ArticleId IdType="pubmed">16463126</ArticleId></ArticleIdList></Reference><Reference><Citation>Arch Virol. 2006 Oct;151(10):2037-45</Citation><ArticleIdList><ArticleId IdType="pubmed">16699829</ArticleId></ArticleIdList></Reference><Reference><Citation>Genetics. 2007 Jun;176(2):1035-47</Citation><ArticleIdList><ArticleId IdType="pubmed">17409078</ArticleId></ArticleIdList></Reference><Reference><Citation>Arch Virol. 2008;153(1):1-13</Citation><ArticleIdList><ArticleId IdType="pubmed">17943395</ArticleId></ArticleIdList></Reference><Reference><Citation>Virus Res. 2008 Feb;131(2):199-212</Citation><ArticleIdList><ArticleId IdType="pubmed">18029044</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2007 Dec 4;104(49):19398-403</Citation><ArticleIdList><ArticleId IdType="pubmed">18042704</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Biol Evol. 2008 Jul;25(7):1307-20</Citation><ArticleIdList><ArticleId IdType="pubmed">18367465</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Biol Evol. 2009 Jan;26(1):143-53</Citation><ArticleIdList><ArticleId IdType="pubmed">18922760</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Bioinformatics. 2009 Apr 27;10:126</Citation><ArticleIdList><ArticleId IdType="pubmed">19397803</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Plant Pathol. 2010 Jan;11(1):161-8</Citation><ArticleIdList><ArticleId IdType="pubmed">20078785</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2010 Jul;38(Web Server issue):W7-13</Citation><ArticleIdList><ArticleId IdType="pubmed">20435676</ArticleId></ArticleIdList></Reference><Reference><Citation>Annu Rev Phytopathol. 2010;48:205-23</Citation><ArticleIdList><ArticleId IdType="pubmed">20438367</ArticleId></ArticleIdList></Reference><Reference><Citation>Am J Bot. 2009 Jan;96(1):349-65</Citation><ArticleIdList><ArticleId IdType="pubmed">21628193</ArticleId></ArticleIdList></Reference><Reference><Citation>Am J Bot. 2008 Feb;95(2):252-7</Citation><ArticleIdList><ArticleId IdType="pubmed">21632349</ArticleId></ArticleIdList></Reference><Reference><Citation>Phytopathology. 2011 Sep;101(9):1052-60</Citation><ArticleIdList><ArticleId IdType="pubmed">21834725</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Biol. 2012 Jan 26;13(1):R3</Citation><ArticleIdList><ArticleId IdType="pubmed">22280555</ArticleId></ArticleIdList></Reference><Reference><Citation>J Mol Biol. 1990 Oct 5;215(3):403-10</Citation><ArticleIdList><ArticleId IdType="pubmed">2231712</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Biol Evol. 2012 Aug;29(8):1969-73</Citation><ArticleIdList><ArticleId IdType="pubmed">22367748</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Biol Evol. 2012 Sep;29(9):2157-67</Citation><ArticleIdList><ArticleId IdType="pubmed">22403239</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Methods. 2012 Sep 20;8(1):41</Citation><ArticleIdList><ArticleId IdType="pubmed">22995534</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2012;7(11):e50631</Citation><ArticleIdList><ArticleId IdType="pubmed">23226339</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Biol Evol. 2013 Apr;30(4):772-80</Citation><ArticleIdList><ArticleId IdType="pubmed">23329690</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Phylogenet Evol. 2013 Feb;66(2):539-50</Citation><ArticleIdList><ArticleId IdType="pubmed">23375140</ArticleId></ArticleIdList></Reference><Reference><Citation>Nature. 2013 Mar 14;495(7440):246-50</Citation><ArticleIdList><ArticleId IdType="pubmed">23467094</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Biol Evol. 2013 Jul;30(7):1720-8</Citation><ArticleIdList><ArticleId IdType="pubmed">23564938</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Cell. 2013 Dec;25(12):4777-88</Citation><ArticleIdList><ArticleId IdType="pubmed">24319081</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2014 Jun 17;111(24):8791-6</Citation><ArticleIdList><ArticleId IdType="pubmed">24889615</ArticleId></ArticleIdList></Reference><Reference><Citation>Virus Res. 2014 Oct 13;191:45-50</Citation><ArticleIdList><ArticleId IdType="pubmed">25051147</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2014 Sep 26;9(9):e108277</Citation><ArticleIdList><ArticleId IdType="pubmed">25259891</ArticleId></ArticleIdList></Reference><Reference><Citation>J Virol. 2015 May;89(9):4760-9</Citation><ArticleIdList><ArticleId IdType="pubmed">25673712</ArticleId></ArticleIdList></Reference><Reference><Citation>Phytopathology. 2015 Jul;105(7):966-81</Citation><ArticleIdList><ArticleId IdType="pubmed">25760519</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Biol Evol. 2015 Jul;32(7):1895-906</Citation><ArticleIdList><ArticleId IdType="pubmed">25771196</ArticleId></ArticleIdList></Reference><Reference><Citation>Syst Biol. 2016 Jan;65(1):82-97</Citation><ArticleIdList><ArticleId IdType="pubmed">26424727</ArticleId></ArticleIdList></Reference><Reference><Citation>Sci Rep. 2015 Oct 28;5:15841</Citation><ArticleIdList><ArticleId IdType="pubmed">26508692</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2015 Nov 18;10(11):e0141923</Citation><ArticleIdList><ArticleId IdType="pubmed">26580202</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Biol Evol. 2016 Jul;33(7):1870-4</Citation><ArticleIdList><ArticleId IdType="pubmed">27004904</ArticleId></ArticleIdList></Reference><Reference><Citation>Arch Virol. 2016 Jul;161(7):2051-7</Citation><ArticleIdList><ArticleId IdType="pubmed">27101071</ArticleId></ArticleIdList></Reference><Reference><Citation>J Gen Virol. 1989 Apr;70 ( Pt 4):935-47</Citation><ArticleIdList><ArticleId IdType="pubmed">2732709</ArticleId></ArticleIdList></Reference><Reference><Citation>Virus Evol. 2015 May 26;1(1):vev003</Citation><ArticleIdList><ArticleId IdType="pubmed">27774277</ArticleId></ArticleIdList></Reference><Reference><Citation>Virus Evol. 2016 Apr 09;2(1):vew007</Citation><ArticleIdList><ArticleId IdType="pubmed">27774300</ArticleId></ArticleIdList></Reference><Reference><Citation>Virology. 2017 Jan;500:130-138</Citation><ArticleIdList><ArticleId IdType="pubmed">27825033</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2016 Nov 29;113(48):13672-13677</Citation><ArticleIdList><ArticleId IdType="pubmed">27849582</ArticleId></ArticleIdList></Reference><Reference><Citation>Virology. 2017 Jul;507:40-52</Citation><ArticleIdList><ArticleId IdType="pubmed">28399436</ArticleId></ArticleIdList></Reference><Reference><Citation>Virus Evol. 2017 Mar 02;3(1):vex002</Citation><ArticleIdList><ArticleId IdType="pubmed">28458913</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2017 Nov 14;114(46):E9999-E10008</Citation><ArticleIdList><ArticleId IdType="pubmed">29087343</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 1979 Oct;76(10):5269-73</Citation><ArticleIdList><ArticleId IdType="pubmed">291943</ArticleId></ArticleIdList></Reference><Reference><Citation>Proc Natl Acad Sci U S A. 2018 Jul 31;115(31):7985-7990</Citation><ArticleIdList><ArticleId IdType="pubmed">30018064</ArticleId></ArticleIdList></Reference><Reference><Citation>Virology. 2018 Dec;525:200-204</Citation><ArticleIdList><ArticleId IdType="pubmed">30296680</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 2018 Nov 9;362(6415):627-628</Citation><ArticleIdList><ArticleId IdType="pubmed">30409866</ArticleId></ArticleIdList></Reference><Reference><Citation>Sci Adv. 2018 Nov 08;4(11):eaau4921</Citation><ArticleIdList><ArticleId IdType="pubmed">30417096</ArticleId></ArticleIdList></Reference><Reference><Citation>Curr Opin Virol. 2018 Dec;33:177-183</Citation><ArticleIdList><ArticleId IdType="pubmed">30428411</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 2018 Dec 14;362(6420):1246-1247</Citation><ArticleIdList><ArticleId IdType="pubmed">30545874</ArticleId></ArticleIdList></Reference><Reference><Citation>Science. 2018 Dec 14;362(6420):1309-1313</Citation><ArticleIdList><ArticleId IdType="pubmed">30545889</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Dis. 2018 May;102(5):869-885</Citation><ArticleIdList><ArticleId IdType="pubmed">30673374</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Dis. 2018 Jan;102(1):185-196</Citation><ArticleIdList><ArticleId IdType="pubmed">30673468</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Dis. 2015 Mar;99(3):387-394</Citation><ArticleIdList><ArticleId IdType="pubmed">30699694</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Dis. 2010 Dec;94(12):1384-1397</Citation><ArticleIdList><ArticleId IdType="pubmed">30743397</ArticleId></ArticleIdList></Reference><Reference><Citation>Plant Dis. 2019 Jul;103(7):1746-1756</Citation><ArticleIdList><ArticleId IdType="pubmed">31082318</ArticleId></ArticleIdList></Reference><Reference><Citation>Arch Virol. 1993;132(1-2):161-70</Citation><ArticleIdList><ArticleId IdType="pubmed">8352655</ArticleId></ArticleIdList></Reference><Reference><Citation>J Virol Methods. 1997 Jan;63(1-2):9-16</Citation><ArticleIdList><ArticleId IdType="pubmed">9015271</ArticleId></ArticleIdList></Reference><Reference><Citation>J Gen Virol. 1997 Dec;78 ( Pt 12):3141-5</Citation><ArticleIdList><ArticleId IdType="pubmed">9400962</ArticleId></ArticleIdList></Reference><Reference><Citation>Trends Biochem Sci. 1998 Oct;23(10):403-5</Citation><ArticleIdList><ArticleId IdType="pubmed">9810230</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>Australie</li><li>Japon</li><li>Pérou</li><li>États-Unis</li></country><region><li>Washington (État)</li></region></list><tree><country name="Pérou"><noRegion><name sortKey="Fuentes, Segundo" sort="Fuentes, Segundo" uniqKey="Fuentes S" first="Segundo" last="Fuentes">Segundo Fuentes</name></noRegion><name sortKey="Jones, Roger A C" sort="Jones, Roger A C" uniqKey="Jones R" first="Roger A C" last="Jones">Roger A C. Jones</name><name sortKey="Kreuze, Jan" sort="Kreuze, Jan" uniqKey="Kreuze J" first="Jan" last="Kreuze">Jan Kreuze</name></country><country name="États-Unis"><region name="Washington (État)"><name sortKey="Jones, Roger A C" sort="Jones, Roger A C" uniqKey="Jones R" first="Roger A C" last="Jones">Roger A C. Jones</name></region></country><country name="Australie"><noRegion><name sortKey="Matsuoka, Hiroki" sort="Matsuoka, Hiroki" uniqKey="Matsuoka H" first="Hiroki" last="Matsuoka">Hiroki Matsuoka</name></noRegion><name sortKey="Ohshima, Kazusato" sort="Ohshima, Kazusato" uniqKey="Ohshima K" first="Kazusato" last="Ohshima">Kazusato Ohshima</name></country><country name="Japon"><noRegion><name sortKey="Gibbs, Adrian J" sort="Gibbs, Adrian J" uniqKey="Gibbs A" first="Adrian J" last="Gibbs">Adrian J. Gibbs</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/PhytophthoraV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000411 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000411 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Bois
|area= PhytophthoraV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:31559020
|texte= Potato virus Y; the Andean connection.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:31559020" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a PhytophthoraV1
| This area was generated with Dilib version V0.6.38. |  |